Debugging Intelligence at Scale

The MRR benchmark tests real world debugging with scattered, evolving, and multi-modal code, highlighting Chronos's breakthrough performance.

Kodezi Team

Jul 23, 2025

The field of AI evaluation has long relied on benchmarks that test isolated capabilities: code completion, function generation, or simple bug fixing. But debugging in the real world is fundamentally different. It requires finding and connecting scattered pieces of information across vast codebases, understanding how code evolved over months or years, and reasoning about complex relationships between seemingly unrelated components. Traditional benchmarks completely miss this reality. Kodezi Chronos introduces the Multi-Random Retrieval (MRR) benchmark, a revolutionary evaluation framework that finally captures the true complexity of real-world debugging.


The Fundamental Failure of Traditional Benchmarks

Consider the popular "Needle in a Haystack" benchmark, where models must find a specific piece of information hidden in a large context. While this tests basic retrieval, it bears little resemblance to actual debugging. The "needle" is usually a distinctive phrase or unusual pattern that stands out clearly once found. The "haystack" is typically irrelevant filler text with no semantic relationship to the needle. The task is binary: find the exact match or fail.

Real debugging is nothing like this. The information you need isn't a single distinctive needle but multiple related fragments scattered across different files. These fragments don't stand out—they look like normal code. The surrounding context isn't irrelevant filler but semantically related code that might or might not be important. Success isn't binary but requires assembling the right combination of information to understand and fix the problem.

Traditional benchmarks vs real debugging: Finding a distinctive needle vs assembling scattered, similar-looking pieces

This fundamental mismatch explains why models that excel at traditional benchmarks often fail miserably at real debugging. They're trained to find distinctive patterns, not to understand and connect subtle relationships across scattered information.


The Multi-Random Retrieval Benchmark: Design Philosophy

The MRR benchmark represents a paradigm shift in how we evaluate debugging capabilities. Instead of testing whether AI can find obvious needles, it tests whether AI can do what developers actually do: piece together a complete understanding from fragments scattered across space, time, and abstraction levels.

The core design principles of MRR reflect the realities of production debugging:

Spatial Distribution: In real codebases, debugging information is rarely colocated. A bug might manifest in one module, have its root cause in another, require configuration knowledge from a third, and need test understanding from a fourth. MRR simulates this by randomly distributing relevant information across 10-50 files, ensuring no single file contains enough information to solve the problem.

Temporal Dispersion: Bugs often involve code evolution over time. A seemingly innocent change three months ago might interact badly with a refactoring from last week. MRR incorporates temporal dispersion by spreading relevant information across 3-12 months of commit history, requiring models to understand not just current code but how it evolved.

Obfuscated Dependencies: Real code undergoes constant refactoring. Variable names change, functions get renamed, modules are restructured. What was once a clear relationship becomes obscured over time. MRR simulates this through systematic obfuscation of dependencies between bug introduction and discovery.

Multi-Modal Artifacts: Debugging requires more than just reading code. Developers use test results, log files, documentation, commit messages, issue reports, and more. MRR includes all these artifact types, requiring models to synthesize information across different formats and purposes.

MRR benchmark structure: Debugging context randomly distributed across files, time, and artifact types


The 5,000 Scenarios: Real Debugging, Real Complexity

The MRR benchmark consists of 5,000 carefully crafted debugging scenarios, each based on real-world debugging patterns observed in production systems. These aren't synthetic puzzles but realistic debugging challenges that mirror what developers face daily.


Scenario Categories

The scenarios are distributed across different debugging categories to ensure comprehensive evaluation:

MRR scenario distribution across debugging categories

Each scenario is carefully constructed to require genuine debugging reasoning, not pattern matching. Let's examine a concrete example:


Example Scenario: The Authentication Service Mystery

Setup: A production authentication service starts failing intermittently after a routine deployment. The error message is generic: "Authentication failed for user."

Information Distribution:

  • File 1 (auth_service.py): Current authentication logic, looks normal

  • File 15 (config/prod.yaml): Production configuration, updated 2 weeks ago

  • File 23 (migrations/add_user_field.sql): Database migration from 3 months ago

  • File 31 (tests/test_auth.py): Test file, some tests skipped with "TODO: fix after migration"

  • File 42 (docs/api_changes.md): Documentation mentioning field deprecation

  • File 7 (cache_manager.py): Caching logic, refactored last month

  • File 38 (logs/deploy.log): Deployment log showing cache clear failure

Hidden Relationship: The database migration added a new required field, but the cache still contains old user objects without this field. The config change 2 weeks ago reduced cache TTL, making the issue more frequent. The deployment cache clear failed, leaving stale data.

Required Reasoning: To solve this, a model must:

  1. Connect the generic error to potential causes

  2. Trace through the authentication flow

  3. Discover the database schema change from months ago

  4. Understand the caching layer's role

  5. Connect the config change to symptom frequency

  6. Identify the failed cache clear as the trigger

  7. Synthesize a fix that handles both old and new user objects

This scenario exemplifies MRR's approach: the information is all there, but scattered across time, files, and artifact types. No single retrieval query would find all necessary pieces. Success requires intelligent, iterative exploration and reasoning.


Evaluation Metrics: Beyond Simple Accuracy

The MRR benchmark uses sophisticated metrics that capture different aspects of debugging capability:


Retrieval Precision@k

This measures what fraction of retrieved artifacts are actually relevant to solving the bug. Traditional systems often retrieve syntactically similar but semantically irrelevant code. Chronos achieves 89.2% precision by understanding the semantic relationships between artifacts.

The precision calculation considers not just whether retrieved content mentions similar keywords, but whether it contributes to understanding or fixing the bug. For example, retrieving a test file is only considered precise if that test actually helps identify the bug's behavior or validate the fix.


Retrieval Recall@k

Recall measures whether the system finds all the necessary pieces to solve the problem. This is particularly challenging in MRR because relevant information is deliberately scattered. Many systems achieve reasonable precision by being conservative but fail catastrophically on recall.

Chronos's 84.7% recall demonstrates its ability to systematically explore the codebase and identify all relevant pieces, even when they're separated by months of history and dozens of files.


Fix Accuracy

The ultimate test: can the system generate a correct fix given the retrieved context? This is where the gap between Chronos and traditional systems becomes most apparent. While others hover around 10-15%, Chronos achieves 67.3% fix accuracy.

This dramatic difference reflects Chronos's integrated approach. It's not just finding relevant information but understanding how the pieces fit together to form a complete picture of the bug and its solution.


Context Efficiency

An often-overlooked metric is how efficiently systems use retrieved context. Context efficiency measures the ratio of used versus retrieved tokens in the final solution. Traditional systems often retrieve enormous amounts of context but use very little of it effectively.

Chronos's 71% context efficiency shows that its retrieval is not just comprehensive but targeted. Nearly three-quarters of what it retrieves actually contributes to the solution.


Comparative Analysis: Why Traditional Approaches Fail

To understand why Chronos excels where others fail, let's analyze how different approaches handle MRR challenges:


Traditional RAG: Lost in Similarity

Retrieval-Augmented Generation systems using vector similarity search face fundamental limitations in MRR scenarios:

Traditional RAG retrieves semantically similar but debugging-irrelevant content

The problem is that vector similarity is based on semantic resemblance, but debugging often requires finding semantically different but causally related information. A database migration file has little semantic similarity to an authentication error, but it might be the key to understanding the bug.

Traditional RAG achieves only 42.3% precision and 31.7% recall on MRR because it retrieves based on surface similarity rather than debugging relevance. It finds lots of files that mention "authentication" or "error" but misses the configuration change, the old migration, and the deployment log that actually explain the problem.


Enhanced Vector Databases: Better but Still Limited

Systems like Claude-3 with enhanced vector databases show improvement by using more sophisticated embedding models and metadata filtering. They achieve 48.1% precision and 36.2% recall by better understanding code semantics.

However, they still struggle with temporal relationships and cross-modal reasoning. A vector database might understand that two pieces of code are related but not that one is a three-month-old change that breaks assumptions in the other.


Graph-Enhanced Retrieval: A Step Forward

Gemini-1.5's graph-enhanced approach represents a significant improvement, achieving 51.7% precision and 41.8% recall. By modeling explicit relationships between code artifacts, it can follow dependency chains and find structurally related information.

Graph retrieval follows structure but lacks temporal and semantic understanding

Yet even graph-enhanced retrieval falls short on MRR because it lacks temporal awareness (when changes occurred), semantic understanding (why relationships matter), and multi-modal integration (connecting code to logs, docs, and tests).


Chronos: Integrated Debugging Intelligence

Chronos achieves dramatically superior results through its integrated approach:

Chronos integrates multiple retrieval strategies to find complete debugging context

Chronos succeeds by combining:

  • Semantic understanding: Knows that "authentication failed" might relate to user data structure changes

  • Structural awareness: Follows code dependencies through the caching layer

  • Temporal intelligence: Understands that old changes can cause new problems

  • Causal reasoning: Connects deployment events to runtime behavior

  • Multi-modal integration: Seamlessly reasons across code, configs, logs, and documentation

This integrated approach yields 89.2% precision and 84.7% recall, finding nearly all relevant information while avoiding irrelevant distractions.


Deep Dive: MRR Scenario Analysis

Let's examine how different systems handle a complex MRR scenario to understand why Chronos excels:


Scenario: The Distributed Cache Coherency Bug

Setup: A microservices system experiences data inconsistency where users occasionally see stale data after updates. The issue is sporadic and only occurs under specific load patterns.

Information Distribution:

  1. user_service.py (File 3): Contains user update logic

  2. cache_invalidation.py (File 18): Cache invalidation code, modified 2 months ago

  3. message_queue_config.json (File 27): Message queue configuration, updated last week

  4. test_cache_coherency.py (File 41): Failing test, but marked as "flaky"

  5. architecture_decisions.md (File 8): Documents caching strategy from 6 months ago

  6. performance_tuning.yaml (File 35): Recent performance optimizations

  7. incident_report_2024_01.md (File 52): Similar issue from 4 months ago

  8. deploy_manifest.yaml (File 14): Shows services deployed at different times


How Different Systems Approach This

Traditional RAG:

  • Searches for "data inconsistency" and "stale data"

  • Retrieves user_service.py and some error handling code

  • Misses the cache invalidation logic entirely

  • Fails to connect message queue config to the problem

  • Result: Suggests adding more logging (doesn't fix the issue)

Vector Database Enhanced:

  • Better semantic understanding links "stale data" to caching

  • Finds user_service.py and cache_invalidation.py

  • Still misses the message queue configuration change

  • Doesn't retrieve the historical incident report

  • Result: Suggests cache timeout adjustments (partial fix)

Graph-Enhanced:

  • Follows code dependencies to find cache and message queue

  • Retrieves most relevant code files

  • Misses the temporal aspect of the configuration change

  • Doesn't connect to the previous incident

  • Result: Identifies cache invalidation issue but not root cause

Chronos:

Chronos’s systematic multi-dimensional retrieval uncovers the complete bug context

Chronos's approach reveals the complete picture:

  1. Initial analysis identifies this as a cache coherency problem

  2. Graph traversal finds all related components

  3. Temporal analysis reveals the message queue config was changed to optimize performance

  4. Pattern matching finds a similar incident that provides crucial clues

  5. Synthesis reveals that the performance optimization reduced message delivery guarantees, creating a race condition in cache invalidation

Chronos's Fix: Adjusts message queue configuration to guarantee ordered delivery for cache invalidation messages while maintaining performance for other message types.

This scenario demonstrates why MRR is such an effective benchmark. It requires systems to go beyond simple retrieval and perform genuine debugging reasoning across multiple dimensions.


Statistical Analysis: Performance Patterns

Analyzing performance across all 5,000 MRR scenarios reveals interesting patterns:

Success rate vs information scatter: Chronos maintains effectiveness even with extreme distribution


Key observations:

Scatter Resilience: While all systems degrade as information becomes more scattered, Chronos degrades gracefully. Even with information spread across 50 files, it maintains 52.1% success compared to near-zero for traditional approaches.

Temporal Complexity Impact: Scenarios requiring temporal reasoning show the largest performance gaps:

Performance degradation with temporal complexity


Multi-Modal Requirements: Scenarios requiring integration across different artifact types:

Success rate by multi-modal complexity: Chronos excels at integrating diverse artifact types


Implications for AI Debugging Systems

The MRR benchmark reveals fundamental requirements for effective AI debugging systems:


1. Retrieval Must Be Multi-Dimensional

Single-strategy retrieval fails catastrophically on real debugging tasks. Systems need to combine:

  • Semantic similarity for finding related concepts

  • Structural analysis for understanding code relationships

  • Temporal awareness for tracking changes over time

  • Causal reasoning for understanding bug propagation

  • Multi-modal integration for leveraging all available information


2. Context Assembly Requires Intelligence

Finding relevant pieces is only the first step. Systems must intelligently assemble these pieces into a coherent understanding. This requires:

  • Understanding how different pieces relate

  • Identifying missing information and searching for it

  • Synthesizing a complete picture from partial information

  • Validating hypotheses against available evidence


3. Evaluation Must Reflect Reality

Traditional benchmarks that test isolated capabilities provide little insight into real-world debugging performance. Future benchmarks should:

  • Simulate realistic information distribution

  • Require multi-step reasoning

  • Test temporal and causal understanding

  • Measure both retrieval and problem-solving capabilities


4. Specialized Training Matters

The dramatic performance gap between Chronos and general-purpose models demonstrates that debugging-specific training is crucial. Models need to learn:

  • Debugging patterns and strategies

  • How to navigate codebases effectively

  • The relationship between symptoms and root causes

  • How to synthesize fixes from understood problems


Building Better Benchmarks: Lessons from MRR

The success of MRR provides valuable lessons for creating more effective AI evaluation benchmarks:


Embrace Complexity

Real-world tasks are complex. Benchmarks that oversimplify provide false confidence. MRR succeeds because it doesn't shy away from the full complexity of debugging:

  • Multiple interacting components

  • Temporal dependencies

  • Obfuscated relationships

  • Multi-modal information sources


Test Integration, Not Isolation

Most benchmarks test capabilities in isolation: retrieval OR reasoning OR generation. MRR tests the integration of all these capabilities, which is what matters in practice.


Use Realistic Scenarios

Synthetic puzzles and toy problems don't translate to real-world performance. MRR's scenarios are derived from actual debugging situations, ensuring that performance on the benchmark correlates with practical effectiveness.


Measure What Matters

Traditional metrics like BLEU scores or exact match accuracy often miss the point. MRR's metrics directly measure debugging effectiveness:

  • Can the system find all relevant information?

  • Does it use that information effectively?

  • Can it generate a working fix?

  • How efficiently does it solve the problem?


The Future of Debugging Evaluation

The MRR benchmark represents just the beginning of more realistic AI evaluation. Future directions include:


Dynamic Benchmarks

Static benchmarks can be gamed or overfit. Future benchmarks should dynamically generate scenarios based on real codebases, ensuring that systems must truly understand debugging rather than memorizing solutions.


Interactive Evaluation

Real debugging is interactive. Future benchmarks should test systems' ability to:

  • Respond to test results

  • Refine hypotheses based on feedback

  • Ask clarifying questions when needed

  • Validate fixes through execution


Cross-Domain Evaluation

Debugging patterns vary across domains. Future benchmarks should test:

  • Web application debugging

  • Systems programming issues

  • Mobile app problems

  • Infrastructure and deployment bugs

  • Domain-specific challenges (ML, blockchain, embedded)


Collaborative Debugging

Real debugging often involves multiple people. Future benchmarks should evaluate:

  • Ability to explain findings to others

  • Integration with human debugging workflows

  • Learning from human feedback

  • Teaching debugging strategies to humans


Conclusion: A New Standard for AI Evaluation

The Multi-Random Retrieval benchmark fundamentally changes how we evaluate AI debugging capabilities. By simulating the true complexity of real-world debugging with information scattered across space, time, and modalities, it reveals the vast gap between current AI systems and effective debugging tools.

Chronos's dominant performance on MRR, achieving 89.2% precision and 67.3% fix accuracy compared to less than 15% for traditional approaches, demonstrates that specialized architectures and training can overcome these challenges. But more importantly, MRR establishes a new standard for AI evaluation: benchmarks that test real capabilities in realistic scenarios.

As we build increasingly sophisticated AI systems, our evaluation methods must evolve accordingly. MRR shows the way forward: embracing complexity, testing integration, using realistic scenarios, and measuring what truly matters. Only through such rigorous evaluation can we build AI systems that genuinely augment human capabilities rather than merely impressing on simplified benchmarks.

The future of AI debugging, and AI evaluation more broadly, lies not in finding needles in haystacks but in understanding the complex, interconnected nature of real-world problems. MRR is the first step on that journey, and Chronos's success demonstrates that the destination is within reach.